Computational pipeline for the CROP-Seq screen in the following manuscript:
Ruilin Tian, Anthony Abarientos, Jason Hong, Sayed Hadi Hashemi, Rui Yan, Nina Dräger, Kun Leng, Mike A. Nalls, Andrew B. Singleton, Ke Xu, Faraz Faghri, Martin Kampmann
bioRxiv 2020.06.27.175679; doi: https://doi.org/10.1101/2020.06.27.175679
Download the Jupyter Notebook by Ruilin Tian, Kampmann lab, here.
Download mappings of sgRNAs to single cells here.